Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV027215 | GenBank Accession | ON263379 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 557 |
| Definition | Human bocavirus isolate 18HXD_610 capsid protein VP1 (VP1) and capsid protein VP2 (VP2) genes, partial cds. | Submission Date | 2022-04-18 |
| Strain Name | 18HXD_610 | Sampling Date | from 2018-10 to 2018-12 |
| Sampling Country | China | Location | Qingdao, China |
| Submitted By | Wang,W. | Submitting Institution | Bioinformatics Department, Qingdao Center for Disease Control and Prevention, 175# Shandong Road, Qingdao, Shandong 266000, China |
| Original Host | Homo sapiens | Sample Type | nasopharyngeal swabs |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Direct immunofluorescence assay (DFA) respiratory virus screening and ID kit, Diagnostic Hybrids, USA | Investigate the presence of seven respiratory viruses in nasopharyngeal swab samples | 36033842 | View Related Publication |
| 2 | MagNA Pure 96 DNA and Viral NA Small Volume Kit (Roche, Basel, Switzerland) | Extract total nucleic acids from nasopharyngeal swabs | ||
| 3 | One-step multiplex real-time RT-PCR kit (Neuro-Hemin Biotech Co, Ltd, China) | Detect and screen the presence of 16 respiratory viruses | ||
| 4 | One-step multiplex fluorescence real-time PCR kit (Neuro-Hemin Biotech Co, Ltd, China) | Detect 16 bacterial pathogens | ||
| 5 | TaKaRa Ex Taq DNA Polymerase kit (Code: RR001A) | Panbocavirus nested PCR amplification of the 576-bp HBoV VP1/2 gene |