ParvoDB ID PV026172 GenBank Accession KM670420
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 303
Definition Human parvovirus B19 isolate IR99 non-structural protein 1 (NS1) and minor structural protein (VP1) genes, partial cds. Submission Date 2014-09-29
Strain Name IR99 Sampling Date from 2014-01 to 2014-04
Sampling Country Iran Location Iranian Research Center for HIV/AIDS in Tehran, Iran, Iran
Submitted By Ramezani,A., Azadmanesh,K., Kazemimanesh,M., Mohraz,M., Aghakhani,A., Foroughi,M., Banifazl,M. and Eslamifar,A. Submitting Institution Pasteur Institute of Iran, Pasteur Institute of Iran (IPI), No. 358, 12th Farwardin Ave, Jomhhoori St, Tehran 1316943551, Iran
Original Host Homo sapiens Sample Type plasma samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 EUROIMMUN ELISA kits Detection of B19 specific IgG and IgM antibodies in plasma samples. 25771750 View Related Publication
2 RTP DNA/RNA Virus Mini Kit (Invitek, Berlin, Germany) Extraction of viral DNA from plasma samples.
3 PCO3 primer Ampli?cation of b-globin gene to confirm the suitability of extracted DNA.
4 PCO4 primer Ampli?cation of b-globin gene to confirm the suitability of extracted DNA.
5 Taq polymerase (YTA PCR Master Mix, Iran) Polymerase chain reaction (PCR) to amplify DNA sequences.
6 1st PCR Reaction Primers (1 and 6) Detection of B19-DNA in the first step of nested PCR.
7 2nd PCR Reaction Primers (2 and 5) Detection of B19-DNA in the second step of nested PCR.
8 B19 primers P5F and P5R Amplification of a 349 bp fragment of B19 genomic DNA in the first-round of PCR.
9 B19 primers n-P5F and n-P5R Amplification of a 335 bp fragment of B19 genomic DNA in the second-round of PCR.
10 QIAquick PCR purification kit (Qiagen, Hilden, Germany) Purification of nested PCR products for sequencing.
11 100-bp DNA ladder (Sinaclon, Iran) Sizing of PCR products during agarose gel electrophoresis.
12 Ethidium bromide Staining DNA in agarose gel electrophoresis for visualization under UV light.
13 B19 plasmid Used as a positive control in PCR reactions.
14 Distilled water Used as a negative control in PCR reactions.