Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV025620 | GenBank Accession | JQ513507 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 2016 |
| Definition | Human bocavirus isolate HBOV/Athens.GRC/589.08 capsid protein VP1 and capsid protein VP2 genes, complete cds. | Submission Date | 2012-01-26 |
| Strain Name | HBOV/Athens.GRC/589.08 | Sampling Date | 2008 |
| Sampling Country | Greece | Location | healthcare units of Southern Greece and in collaborating paediatric hospitals of Athens, Greece |
| Submitted By | Pogka,V., Moutousi,A., Kossyvakis,A., Kalliaropoulos,A., Sgouras,D.N., Giannaki,M. and Mentis,A.F. | Submitting Institution | National Influenza Reference Laboratory of Southern Greece, Hellenic Pasteur Institute, Vas. Sofias AVE, Athens 11521, Greece |
| Original Host | Homo sapiens | Sample Type | nasopharyngeal aspirates and/or throat swabs |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Viral transport medium (Mediaproducts BV, Groningen, The Netherlands) | Transporting clinical specimens to the laboratory. | 24373295 | View Related Publication |
| 2 | Specific primers for HMPV (HMPV F1 and HMPV R1) | Amplification of the genomic region corresponding to the full-length G protein coding region of HMPV. | ||
| 3 | Specific primers for HBoV (HBoV F1, HBoV R1, HBoV F2, HBoV R2, HBoV F3, HBoV R3, HBoV F4, HBoV R4) | Amplification of the complete VP1/VP2 gene region of HBoV. | ||
| 4 | QIAquick PCR purification kit (Qiagen, Hilden, Germany) | Purification of PCR products. | ||
| 5 | MinEluteTM gel extraction kit (Qiagen) | Purification of PCR products. | ||
| 6 | GenomeLab DTCS-quick start sequencing kit (Beckman Coulter, Brea, CA, USA) | Direct sequencing in both directions. |