ParvoDB ID PV024132 GenBank Accession KX856939
Subfamily Parvovirinae Genus protoparvovirus
Species unclassified Protoparvovirus Sequence Length 1719
Definition Bufavirus-3 isolate 3.10VLP VP2 gene, complete cds. Submission Date 2016-09-13
Strain Name 3.10VLP Sampling Date
Sampling Country Bhutan Location Bhutan
Submitted By Vaisanen,E. and Soderlund-Venermo,M. Submitting Institution Deparment of Virology, Faculty of Medicine, University of Helsinki, Haartmaninkatu 3, Helsinki, Finland 00290, Finland
Original Host Homo sapiens Sample Type stool
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 QIAamp DNA mini kit (Qiagen, Germany) Extraction of DNA from stool samples. 27966636 View Related Publication
2 Phusion High-Fidelity DNA Polymerase (Thermo Fischer Scientific) Amplification of the putative VP2 gene.
3 pFastBacDual vector (Invitrogen) Insertion of the VP2 amplicon for creating recombinant baculoviruses.
4 EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Fischer Scientific) Biotinylation of purified VP2 VLPs and insect cell lysate.
5 Complete-EDTA-free protease inhibitor cocktail (Roche) Protection of proteins during insect cell culture lysis.
6 Sodium deoxycholate (Sigma-Aldrich) Treatment of cell suspensions for protein extraction.
7 Tris-HCl buffer Cell lysis and protein purification for ultracentrifugation.
8 CsCl Creating a double cushion for ultracentrifugation and purifying VLPs.
9 PBS containing 0.05% Tween 20 (PBST) Buffer for immobilizing biotinylated VLPs in EIA assays.
10 Horseradish-peroxidase conjugated anti-human IgG (DAKO) Detection of human IgG in EIA assays.
11 3,3′,5,5′-tetramethylbenzidine (TMB, DAKO) Substrate for detecting horseradish peroxidase activity in EIA assays.
12 0.5 M H2SO4 Stopping solution for TMB substrate reaction.
13 VP2 VLPs Antigens for BuV and TuV serology in ELISA assays.
14 High5 insect cells Expression of VP2 VLPs for use as control in ELISA assays.
15 Streptavidin-coated plates (UniverSA96-Lockwell, Kaivogen) Immobilization of biotinylated VLPs for ELISA detection.
16 Diluent (Labsystems Diagnostics) Minimizing non-specific background in ELISA assays.
17 Soluble VLPs and insect cell lysate Blocking agents in competition assays for confirming IgG results.