ParvoDB ID PV024083 GenBank Accession GQ907239
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 1136
Definition Human bocavirus isolate Slovenia 2 VP1/VP2 gene, partial cds. Submission Date 2009-09-14
Strain Name Slovenia 2 Sampling Date 2009-01
Sampling Country Slovenia Location Slovenia
Submitted By Ursic,T. and Petrovec,M. Submitting Institution Faculty of medicine, institut of microbiology and immunology, Zaloska 4, Ljubljana, ljubljana SI-1000, Slovenia
Original Host Homo sapiens Sample Type respiratory samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Flocked swabs To collect and transport respiratory samples in liquid viral transport medium. 22028039 View Related Publication
2 Liquid viral transport medium (Copan Italia S.p.A., Brescia, Italy) To transport respiratory samples.
3 Total nucleic acid isolation kit (Roche Applied Science, Mannheim, Germany) To carry out automatic nucleic acid extraction.
4 Equine herpesvirus 1 (EHV1) Added as an internal control during nucleic acid extraction.
5 Platinum Quantitative PCR SuperMix-UDG kit (Invitrogen, Carlsbad, CA) To perform multiplex real-time PCR for HBoV and EHV1.
6 StepOne instrument (Applied Biosystems, Foster City, CA) To conduct PCR amplification.
7 Monoclonal antibodies (Oxoid, Cambridge, UK) To detect antigens of adenovirus (AdV), RSV, influenza viruses A and B, and parainfluenza viruses 1-3 by direct immunofluorescence assay (DFA).
8 Promega PCR Master Mix (Promega, Madison, WI) To amplify the 1,136 bp VP1/VP2 gene region of the HBoV genome for sequencing.
9 BigDye terminator chemistry (Applied Biosystems) To purify and sequence PCR products using an ABI PRISM 310 genetic analyzer.