Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV022154 | GenBank Accession | GQ337718 |
| Subfamily | Parvovirinae | Genus | Erythroparvovirus |
| Species | Erythroparvovirus primate1 | Sequence Length | 873 |
| Definition | Human parvovirus B19 isolate V08/1366 non-structural protein 1 (NS1) and minor structural protein (VP1) genes, partial cds. | Submission Date | 2009-06-30 |
| Strain Name | V08/1366 | Sampling Date | from 2006-08 to 2008-08 |
| Sampling Country | South Africa | Location | Western Cape, South Africa |
| Submitted By | Smuts,H., Corcoran,C., Hardie,D. and Yeats,J. | Submitting Institution | Clinical Laboratory Sciences, University of Cape Town and National Health Laboratory Service, Anzio Road, Observatory, Cape Town, Western Cape 7925, South Africa |
| Original Host | Homo sapiens | Sample Type | blood,bone marrow,amniotic fluid,and a single tissue sample |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Nuclisens EasyMAG platform | Viral DNA extraction from serum or bone marrow samples. | 19923483 | View Related Publication |
| 2 | Elution buffer | Eluting DNA after extraction. | ||
| 3 | Supertherm Taq polymerase | DNA amplification in PCR. | ||
| 4 | Thermo Hybaid PxE 0.2 thermal cycler | Performing thermal cycles for PCR. | ||
| 5 | Ethidium bromide | Staining DNA in agarose gel for visualization under UV light. | ||
| 6 | QIAquick PCR purification kit | Purifying PCR products before sequencing. | ||
| 7 | ABI 3130XL genetic analyzer | Sequencing PCR products. | ||
| 8 | Fluorescent dye terminator kit | Sequencing PCR products with the ABI 3130XL genetic analyzer. |