ParvoDB ID PV021880 GenBank Accession LC720422
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 5349
Definition Human bocavirus 1 HBoV/Fukushima/OR331/2021 DNA, nearly complete genome. Submission Date 2022-07-22
Strain Name HBoV/Fukushima/OR331/2021 Sampling Date 2021
Sampling Country Japan Location Fukushima, Japan
Submitted By Shirato,K., Kume,Y., Suwa,R., Kawase,M., Ono,T., Chishiki,M., Okabe,H., Norito,S., Sato,M., Sakuma,H., Suzuki,S., Hosoya,M., Takeda,M. and Hashimoto,K. Submitting Institution Contact:Kazuya Shirato National Institute of Infectious Diseases, Virology III; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan URL :https://www.niid.go.jp/niid/ja/from-vir3.html
Original Host Homo sapiens Sample Type Nasopharyngeal swabs
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Universal transport medium (Copan, Brescia, Italy) To collect and store nasopharyngeal swabs at ?80°C until use. 38051050 View Related Publication
2 QIAamp 96 Virus QIAcube HT Kit (Qiagen, Hilden, Germany) For the extraction of nucleic acids from specimens.
3 QIAamp Viral RNA Mini Kit (Qiagen) For the extraction of viral RNA from specimens.
4 NucleoSpin 96 Virus (Macherey-Nagel, Duren, Germany) For the extraction of viral RNA from specimens.
5 SMART MMLV Reverse Transcriptase (Takara-Bio, Shiga, Japan) To synthesize cDNA from RNA using Oligo(dT) primer.
6 Oligo(dT) primer (Qiagen) To synthesize cDNA from RNA.
7 Primer random (Roche) To synthesize cDNA from RNA.
8 AgPath-ID One-Step RT-PCR reagents For one-step real-time RT-PCR.
9 LightCycler 480 Probes Master For two-step real-time PCR.
10 Primer/probe sets To detect 17 respiratory viruses by real-time PCR and RT-PCR.
11 HBTEC (FC-0035, LIFELINE Cell Technology, Frederick, MD, USA) To prepare air-liquid interface culture for respiratory virus isolation.
12 Traswell (3470, Corning, One Riverfront Plaza, NY, USA) To culture HBTEC cells.
13 Differentiation medium To culture human airway epithelium cells at an air-liquid interface.
14 1% fetal calf serum (FCS)-Dulbecco's modified Eagle's medium (DMEM) To dilute specimens and wash cell cultures during virus isolation.
15 Penicillin-streptomycin, gentamicin, and fungizone To prevent bacterial and fungal contamination in cell cultures.
16 MC-210 (KAC Co Ltd., Hyogo, Japan) To remove mycoplasmas from the basolateral medium.
17 Quantus Fluorometer (Promega, Madison, WI, USA) To measure fluorescence and determine viral copy numbers.
18 NEBNext Ultra II RNA Library Prep Kit for Illumina [New England Biolabs (NEB), Ipswich, MA, USA] To prepare RNA libraries for next-generation sequencing.
19 NEBNext Ultra II FS DNA Library Prep Kit for Illumina (NEB) To prepare DNA libraries for next-generation sequencing.