ParvoDB ID PV021479 GenBank Accession KT906226
Subfamily Parvovirinae Genus Dependoparvovirus
Species Dependoparvovirus primate1 Sequence Length 250
Definition Adeno-associated virus 2 isolate hu.15C nonstructural protein (Rep) gene, partial cds. Submission Date 2015-10-14
Strain Name hu.15C Sampling Date
Sampling Country Iran Location Iran
Submitted By Shafiei Jandaghi,N.Z., Ghavami,N., Yoosefi,Z. and Kiani,J. Submitting Institution Virology Department, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
Original Host Homo sapiens Sample Type tissue samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Paraffin-embedded tissue samples Provided as experimental samples from the archives for analysis. 28285965 View Related Publication
2 Xylene Used to deparaffinize tissue sections.
3 Digestion buffer containing proteinase K Used to digest tissue sections post-deparaffinization.
4 Phenol/chloroform Used for DNA extraction from tissue samples.
5 PCR primers for human β-globin gene Used to evaluate the quality of extracted DNA.
6 Outer PCR primers (MY09/MY11) Consensus primer pair used in the first round of nested PCR for HPV detection targeting the HPV L1 gene.
7 Inner PCR primers (GP5+/GP6+) Consensus primer pair used in the second round of nested PCR for HPV detection targeting the HPV L1 gene.
8 AAV primers F1, Ra, Rb (first round), F2, Ra, Rb (second round) Designed for semi-nested PCR to detect AAV (Rep gene).
9 PUC57 plasmid enclosing desired fragment Used as the positive control for AAV DNA amplification.
10 Positive cervical sample Used as the positive control for HPV DNA amplification.