ParvoDB ID PV020622 GenBank Accession KF309518
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 336
Definition Human parvovirus B19 isolate Af10s NS1 protein (NS1) and VP1 protein (VP1) genes, partial cds. Submission Date 2013-07-01
Strain Name Af10s Sampling Date
Sampling Country Gabon Location Gabon
Submitted By Toan,N.L., Song,L.H., Sy,B.T., Kremsner,P.G., Kandolf,R. and Bock,C.T. Submitting Institution Department of Infectious Diseases, Robert Koch Institute, Nordufer 20, Berlin 13353, Germany
Original Host Homo sapiens; child with malaria Sample Type Serum samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Polymerase chain reaction (PCR) To detect B19V prevalence in serum samples. 23945350 View Related Publication
2 Enzyme-linked immunosorbent assay (ELISA) To analyze anti-B19V-IgM and anti-B19V-IgG antibodies.
3 Direct DNA-sequencing To reconfirm the specificity of PCR products by sequencing.
4 High Pure Viral Nucleic Acid Kit (Roche, Grenzach-Wyhlen, Germany) To extract nucleic acid from patient sera.
5 GeneAmp 7300 sequence analyser (Applied Biosystems Perkin-Elmer, Foster City, CA) To determine B19V-DNA load in serum using quantitative real-time PCR (qPCR).
6 TaqMan Sequence Detection System (Applied Biosystems Perkin-Elmer, Foster City, CA) To perform B19V-specific quantitative real-time PCR (qPCR).
7 BigDye Terminator Cycle Sequencing reaction (Life Technologies Corp., USA) To perform sequencing reactions on purified PCR products.
8 B19V primers For PCR and sequencing to detect the B19V VP1/VP2 and NS1/VP1u regions.
9 Parvovirus B19-IgM ELISA kit (DxSelect FocusDiagnostics, Germany) To detect anti-B19V-IgM antibodies.
10 Parvovirus B19-IgG ELISA kit (DxSelect FocusDiagnostics, Germany) To detect anti-B19V-IgG antibodies.
11 WHO international standards for B19V-DNA (NIBSC Code 99/800) To determine the specificity and sensitivity of the B19V-qPCR.