ParvoDB ID PV020410 GenBank Accession EU429804
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 1629
Definition Human bocavirus isolate NH1 VP2 gene, complete cds. Submission Date 2008-01-25
Strain Name NH1; New Haven 1 Sampling Date
Sampling Country United States of America Location United States of America
Submitted By Tattersall,P., D'Abramo,A. Jr., Cotmore,S.F., Kahn,J.S., Kesebir,D., Cosby,C. and Weibel,C. Submitting Institution Laboratory Medicine, Yale School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA
Original Host human Sample Type respiratory specimen
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 QIAamp nucleic acid purification kit (Qiagen) Extraction of nucleic acids from respiratory specimen positive for HBoV by PCR 18491974 View Related Publication
2 HotStarTaq DNA polymerase (Qiagen) Amplification of the HBoV VP2 gene
3 pFastBac vector (Invitrogen) Cloning of the HBoV VP2 gene
4 Bac-to-Bac Baculovirus Expression System (Invitrogen) Generation of recombinant baculovirus
5 DH10 Escherichia coli cells Transformation for the production of bacmid-containing DNA
6 Sf9 insect cells (Invitrogen) Transfection with baculovirus for virus-like particle (VLP) production
7 Complete Protease Inhibitor Cocktail (Roche Diagnostics) Inhibition of protease activity during cell resuspension and lysis
8 TE 8.7 buffer (50 mmol/L Tris–HCl and 0.5 mmol/L EDTA [pH 8.7]) Resuspending Sf9 cells after infection
9 Iodixanol gradients Purification of virus-like particles (VLPs)
10 Beckman SW41 rotor Centrifugation of gradients at 150,000 g and 18°C for 18 h
11 Sorvall SS-34 rotor Centrifugation for clearing cell lysates
12 SDS-PAGE gels Analysis of gradient fractions
13 Philips 410 transmission electron microscope Examination of VLPs
14 96-well plates (Costar EIA/RIA; Corning) Coating with purified VLPs for ELISA
15 PBS plus 0.05% Tween 20 Washing of ELISA wells
16 5% nonfat milk (in PBS plus 1% Tween 20) Blocking of ELISA wells
17 Horseradish peroxidase–conjugated secondary antibody (anti-IgG [H L]; Jackson ImmunoResearch Laboratories) Detection of bound primary antibodies in ELISA
18 3,3',5,5'-tetramethyl benzidine (Pierce) Chromogenic substrate for peroxidase in ELISA
19 5N H3PO4 Stopping the ELISA chromogenic reaction
20 DynaTech MR5000 microplate reader Measurement of optical densities in ELISA
21 Pooled human serum (Bioreclamation) Development of the ELISA
22 Complete Freund’s adjuvant Initial inoculations for HBoV-specific rabbit antisera production
23 Incomplete Freund’s adjuvant Subsequent inoculations for HBoV-specific rabbit antisera production
24 Purified 284-aa B19-VP fusion protein Production of B19-specific rabbit antiserum
25 Monoclonal antibody against B19 particles (clone 521–50; from Centers for Disease Control and Prevention) Usage in immunofluorescence assays
26 2.5% paraformaldehyde Fixation of cells for immunofluorescence assays
27 0.1% Triton X-100 Permeabilization of cells for immunofluorescence assays
28 FITC–conjugated anti–rabbit IgG antibody (Invitrogen) Detection of rabbit primary antibodies in immunofluorescence assays
29 Texas red–conjugated anti–mouse IgG antibody (Invitrogen) Detection of mouse primary antibodies in immunofluorescence assays
30 4'-6-diamidino-2-phenylindole (DAPI) Nuclear staining in immunofluorescence assays
31 EZ-ChIP kit (Upstate) Immunoprecipitation of DNA-containing virions
32 QIAquick PCR purification units Purification of eluted DNA from immunoprecipitation
33 Anti-B19 immune rabbit antiserum Control in immunoprecipitation assays
34 Control nonimmune serum Control in immunoprecipitation assays
35 Ethidium bromide Detection of PCR products by gel electrophoresis