ParvoDB ID PV017927 GenBank Accession AB823003
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 309
Definition Human bocavirus 1 NP1 gene for non-structural protein, partial cds, strain: KUHBoV58684. Submission Date 2013-05-23
Strain Name KUHBoV58684 Sampling Date 2010-06
Sampling Country Sri Lanka Location Colombo North Teaching Hospital, Ragama, Sri Lanka, Sri Lanka
Submitted By Ahmed,K. and Mori,D. Submitting Institution Contact:Kamruddin Ahmed Oita University, Research Promotion Institute; 1-1 Hasama machi, Yufu, Oita 879-5593, Japan E-mail :ahmed@oita-u.ac.jp Phone :81-97-586-5798 Fax :81-97-586-5719
Original Host Homo sapiens female 46 years old Sample Type Cerebrospinal fluid samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Cerebrospinal fluid (CSF) samples Sample collection for macroscopic examination, leukocyte counts, bacterial culture, Gram staining, protein and glucose measurement, and PCR analysis. 24188380 View Related Publication
2 Blood samples Sample collection for bacterial culture, leukocyte counts, erythrocyte sedimentation rates, hemoglobin and C-reactive protein levels analysis.
3 PCR primers for classical encephalitis-causing pathogens and diarrheagenic viruses Detection of viruses including HBoV, rotavirus, astrovirus, norovirus, parechovirus, and human adenovirus in CSF samples.
4 Anti-NMDAR antibodies Diagnosis of anti-N-methyl-D-aspartate receptor (NMDAR) encephalitis by on-cell Western analysis.
5 HBoV types 1-4-specific IgG and IgM enzyme immunoassays Measurement of HBoV-specific antibodies in CSF samples of PCR-positive patients.
6 Nucleotide sequencing reagents Determination of nucleotide sequences of all amplicons for confirming PCR products, distinguishing genotypes, and performing phylogenetic analysis.
7 16S rRNA PCR amplification reagents Detection of bacteria in CSF samples by sequencing.
8 Cell-based assay reagents for detecting anti-NMDAR antibodies Detection of autoantibody against extracellular epitopes of N-methyl-D-aspartate receptor.