ParvoDB ID PV017924 GenBank Accession AB823000
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 306
Definition Human bocavirus 3 NP1 gene for non-structural protein, partial cds, strain: KUHBoV285. Submission Date 2013-05-23
Strain Name KUHBoV285 Sampling Date 2009-08
Sampling Country Sri Lanka Location Colombo North Teaching Hospital, Ragama, Sri Lanka, Sri Lanka
Submitted By Ahmed,K. and Mori,D. Submitting Institution Contact:Kamruddin Ahmed Oita University, Research Promotion Institute; 1-1 Hasama machi, Yufu, Oita 879-5593, Japan E-mail :ahmed@oita-u.ac.jp Phone :81-97-586-5798 Fax :81-97-586-5719
Original Host Homo sapiens female 8 months old Sample Type Cerebrospinal fluid samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Cerebrospinal fluid (CSF) samples Sample collection for macroscopic examination, leukocyte counts, bacterial culture, Gram staining, protein and glucose measurement, and PCR analysis. 24188380 View Related Publication
2 Blood samples Sample collection for bacterial culture, leukocyte counts, erythrocyte sedimentation rates, hemoglobin and C-reactive protein levels analysis.
3 PCR primers for classical encephalitis-causing pathogens and diarrheagenic viruses Detection of viruses including HBoV, rotavirus, astrovirus, norovirus, parechovirus, and human adenovirus in CSF samples.
4 Anti-NMDAR antibodies Diagnosis of anti-N-methyl-D-aspartate receptor (NMDAR) encephalitis by on-cell Western analysis.
5 HBoV types 1-4-specific IgG and IgM enzyme immunoassays Measurement of HBoV-specific antibodies in CSF samples of PCR-positive patients.
6 Nucleotide sequencing reagents Determination of nucleotide sequences of all amplicons for confirming PCR products, distinguishing genotypes, and performing phylogenetic analysis.
7 16S rRNA PCR amplification reagents Detection of bacteria in CSF samples by sequencing.
8 Cell-based assay reagents for detecting anti-NMDAR antibodies Detection of autoantibody against extracellular epitopes of N-methyl-D-aspartate receptor.