Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV017692 | GenBank Accession | KU220232 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 304 |
| Definition | Human bocavirus 1 isolate Bo/Khartoum/21/2014 capsid protein (VP1) gene, partial cds. | Submission Date | 2015-12-01 |
| Strain Name | Bo/Khartoum/21/2014 | Sampling Date | 2014-08-10 |
| Sampling Country | Sudan | Location | Khartoum, Sudan |
| Submitted By | Adam,M.A.M. | Submitting Institution | Department of Virology, Central Laboratory, Ministry of Science & Technology, Khartoum 7099, Sudan |
| Original Host | None | Sample Type | fecal samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | QIAamp 96 Virus QIAcube HT kit | Extracting viral nucleic acids (RNA, DNA) from fecal suspension | 29487571 | View Related Publication |
| 2 | QIAamp Fast DNA Stool Mini Kit | Extracting bacterial DNA from fecal suspension | ||
| 3 | RNase-and DNase-free water (Qiagen) | Eluting viral and bacterial DNA extracts | ||
| 4 | Primers for Multiplex PCR | Targeting viral and bacterial genomes for PCR amplification | ||
| 5 | PCR Amplifier (ThermoElectronCorp.Vantaa, Finland) | Thermal cycling for amplification of DNA products | ||
| 6 | QIAxcel and DNA Screening kit (Qiagen) | Capillary electrophoresis for detecting amplified DNA products | ||
| 7 | Sanger sequencing reagents (Tsing Ke, Beijing, China) | Sequencing of PCR products obtained from adenovirus and bocavirus positive specimens |