ParvoDB ID PV016974 GenBank Accession KJ541123
Subfamily Parvovirinae Genus Tetraparvovirus
Species Tetraparvovirus primate1 Sequence Length 256
Definition Human parvovirus 4 isolate IND-2012-GKP-21 nonstructural protein 1 gene, partial cds. Submission Date 2014-03-05
Strain Name IND-2012-GKP-21 Sampling Date 2012
Sampling Country India Location India
Submitted By Arankalle,V.A. Submitting Institution Hepatitis, National Institute of Virology, MCC 130/1 Sus Road, Pashan, Pune, Maharashtra 411021, India
Original Host Homo sapiens Sample Type CSF
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Ultrasense Viral RNA Kit (Qiagen, Germany) Isolation of total RNA 30866767 View Related Publication
2 Ribominus Concentration Module (Life technologies, USA) Concentration of isolated RNA
3 Ribominus Eukaryotic Kit v2 (Life technologies, USA) Depletion of ribosomal RNA
4 NEBNext Magnesium RNA Fragmentation Module (New England Biolabs, USA) Fragmentation of mRNA
5 Ion Total RNA Sequencing Kit v2 (Life technologies, USA) Adaptor ligation and synthesis of cDNA library
6 High Sensitivity DNA Chip Kit (Agilent Bioanalyzer 2100) Quantification and size distribution analysis of cDNA library
7 Ion Shear Plus Reagents Kit (Life technologies, USA) Fragmentation of DNA
8 Agencourt Ampure XP DNA Reagent Purification and size selection of adaptor-DNA constructs
9 QIAamp DNA Mini and Blood Mini Kit (Qiagen, Germany) Isolation of DNA from CSF/serum/plasma samples
10 Allprep DNA/RNA Mini Kit (Qiagen, Germany) Isolation of DNA from tissue samples
11 Applied BioSystems TaqMan 2X Universal PCR Master Mix (Invitrogen, USA) Real-time PCR for the detection and quantitation of PARV4 DNA
12 BigDye Terminator Cycle Sequencing Ready Reaction Kit (Applied Biosystems, USA) Sequencing of PCR products
13 ABI Prism 3100 Genetic Analyzer (Applied Biosystems, USA) Automatic sequencing of PCR products
14 The Scrub Typhus Detect IgM and IgG ELISAs (InBios International, Inc, Seattle, USA) Detection of IgM and IgG antibodies against Orientia tsutsugamushi