Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV016659 | GenBank Accession | JQ918261 |
| Subfamily | Parvovirinae | Genus | Protoparvovirus |
| Species | Protoparvovirus primate1 | Sequence Length | 4912 |
| Definition | Bufavirus-1 strain BF.96 NS1, putative VP1, hypothetical protein, and VP2 genes, complete cds. | Submission Date | 2012-04-11 |
| Strain Name | BF.96 | Sampling Date | 2009 |
| Sampling Country | Burkina Faso | Location | Ouagadougou, Burkina Faso |
| Submitted By | Phan,T., Vo,N., Bonkoungou,I., Kapoor,A., Barro,N., O'Ryan,M., Kapusinszky,B., Wang,C. and Delwart,E. | Submitting Institution | Virology, Blood Systems Research Institute, 270 Masonic Avenue, San Francisco, CA 94118, USA |
| Original Host | Homo sapiens | Sample Type | fecal samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | SD Bioline Rota/Adeno | Used for immunochromatographic assay to test for rotavirus. | 22855485 | View Related Publication |
| 2 | Nuclease treatment | Used to digest non-particle-protected nucleic acids during viral particle enrichment. | ||
| 3 | Primers with randomized 3' ends | Used for nonspecific RNA and DNA amplification in random RT-PCR. | ||
| 4 | Primers BF.F1 and BR.R1 | Used for the first round of PCR to detect bufavirus. | ||
| 5 | Primers BF.F2 and BF.R2 | Used for nested PCR round to detect bufavirus with an expected amplicon of 440 bp. |