Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV016646 | GenBank Accession | JX027295 |
| Subfamily | Parvovirinae | Genus | Protoparvovirus |
| Species | Protoparvovirus primate1 | Sequence Length | 4822 |
| Definition | Bufavirus-1 strain BF.7 NS1, putative VP1, hypothetical protein, and VP2 genes, complete cds. | Submission Date | 2012-05-07 |
| Strain Name | BF.7 | Sampling Date | 2008 |
| Sampling Country | Burkina Faso | Location | Burkina Faso |
| Submitted By | Phan,T. and Delwart,E. | Submitting Institution | Virology, Blood Systems Research Institute, 270 Masonic Avenue, San Francisco, CA 94118, USA |
| Original Host | None | Sample Type | fecal samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | SD Bioline Rota/Adeno | Used for immunochromatographic assay to test for rotavirus. | 22855485 | View Related Publication |
| 2 | Nuclease treatment | Used to digest non-particle-protected nucleic acids during viral particle enrichment. | ||
| 3 | Primers with randomized 3' ends | Used for nonspecific RNA and DNA amplification in random RT-PCR. | ||
| 4 | Primers BF.F1 and BR.R1 | Used for the first round of PCR to detect bufavirus. | ||
| 5 | Primers BF.F2 and BF.R2 | Used for nested PCR round to detect bufavirus with an expected amplicon of 440 bp. |