Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV016627 | GenBank Accession | GU563341 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 671 |
| Definition | Human bocavirus strain JP-8387 VP1 and VP2 genes, partial cds. | Submission Date | 2010-01-23 |
| Strain Name | JP-8387 | Sampling Date | 2008-04 |
| Sampling Country | Japan | Location | Japan |
| Submitted By | Pham,N.T.K. and Ushijima,H. | Submitting Institution | Developmental Medical Sciences, International Health, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan |
| Original Host | Homo sapiens | Sample Type | fecal specimens |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | QIAamp viral RNA Mini kit (Qiagen, Inc., GmbH, Hilden, Germany) | To extract nucleic acid from fecal suspension samples. | 21181924 | View Related Publication |
| 2 | Primers 188F and 542R | To amplify a 354-bp PCR product of the NP-1 region for HBoV detection. | ||
| 3 | Primers VP1/VP2F and VP1/VP2R | To amplify an 819-bp segment of the VP1/VP2 gene for HBoV genotyping. | ||
| 4 | BigDye Terminator Cycle Sequencing kit (Perkin Elmer-Applied Biosystems, Inc., Foster City, CA) | For sequencing PCR amplicons of the NP-1 and VP1/VP2 genes. |