ParvoDB ID PV016450 GenBank Accession EU100023
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 295
Definition Human bocavirus isolate Spain043 NP1 (NP1) gene, partial cds. Submission Date 2007-08-16
Strain Name Spain043 Sampling Date
Sampling Country Spain Location Spain
Submitted By Perez-Trallero,E. Submitting Institution Microbiology, Hospital Donostia, Paseo Dr Beguiristain S/N, San Sebastian, Gipuzkoa 20014, Spain
Original Host None Sample Type None
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 BioRobot M48 (QIAGEN, Hilden, Germany) Automatic extractor for obtaining viral DNA and RNA from nasopharyngeal aspirates and stool specimens. 17553287 View Related Publication
2 MagAttract Virus Mini M48 kit (QIAGEN) Used with BioRobot M48 for extracting viral DNA and RNA.
3 M-MuLV reverse transcriptase (Promega, Madison, WI, USA) For obtaining cDNA from RNA.
4 Random primers Used with M-MuLV reverse transcriptase to synthesize cDNA.
5 Primers derived from the NP1 gene For performing PCR to detect HBoV initially.
6 Primers derived from the VP1 gene Used for confirming HBoV detection by a second PCR assay.
7 Standard culture methods For examining fecal specimens for various intestinal pathogens such as Shigella spp., Salmonella spp., Yersinia enterocolitica, Campylobacter spp., and enteroinvasive Escherichia coli O157.
8 Enzyme immunoassay For investigating Rotavirus in fecal specimens.
9 Reverse transcriptase PCR For investigating Norovirus in fecal specimens.
10 Strain Spain001 (GenBank accession no. EF186830) Used as positive control in each PCR run for HBoV detection.