ParvoDB ID PV015787 GenBank Accession HM030978
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 228
Definition Human parvovirus B19 isolate NGA125/2010 non-structural protein 1 (NSP1) gene, partial cds. Submission Date 2010-03-23
Strain Name NGA125/2010 Sampling Date 2008-01
Sampling Country Nigeria Location Nigeria
Submitted By Opaleye,O.O., Fagbami,A.H. and Kun,J.F.J. Submitting Institution Institute for Tropical Medicine, University of Tubingen, Wilhelmstrasse 27, Tubingen, Baden Wuttenberg 72074, Germany
Original Host Homo sapiens Sample Type serum samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Third-generation enzyme-linked immunosorbent assay (ELISA) kits (Human Diagnostics, Wiesbaden, Germany) Detection of HBsAg and anti-HCV antibodies in serum samples. 21328387 View Related Publication
2 Parvovirus B19 IgM and IgG enzyme immunoassay Kits (Parvovirus B19 IgG and IgM, DxSelectTM FOCUS Diagnostic, Hannover, Germany) Detection of antibodies to human parvovirus B19.
3 QIA Amp blood kit (QIAgen, Hilden, Germany) DNA extraction from serum samples.
4 Outer primer pair HBPr134 (sense) and HBPr135 (antisense) Initial PCR amplification targeting highly conserved regions of the S-gene of HBV.
5 10X PCR buffer (Qiagen) Providing the necessary chemical environment for DNA polymerase activity during PCR.
6 dNTPs Nucleotide substrates for DNA synthesis during PCR.
7 Ampli Taq gold DNA polymerase (Applied Biosystems, Foster City, CA) Catalyzing the synthesis of DNA during PCR.
8 Inner primer pair HBPr75 (sense) and HBPr94 (antisense) Nested PCR amplification targeting HBV for increased specificity.
9 Exo-SAP-IT (exonuclease I and shrimp alkaline phosphatase enzyme, USB, Cleveland, OH) Purification of PCR products before sequencing.
10 Forward and reverse primers (nP5R and nP5F) Sequencing of the NS1/VP1u region of parvovirus B19 DNA.
11 Dye labeled dideoxy terminators (Big Dye, Applied Biosystems) Performing the Sanger sequencing reaction.