Panoramic Parvovirus Strain Discovery Data Chain

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ParvoDB ID PV015242 GenBank Accession KM257836
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 721
Definition Human bocavirus 1 isolate K2009000061 VP2 and VP1 genes, partial cds. Submission Date 2014-07-30
Strain Name K2009000061 Sampling Date 2009
Sampling Country Netherlands Location Erasmus MC-Sophia, Netherlands
Submitted By Moesker,F., van Kampen,J., Schutten,M. and Fraaij,P. Submitting Institution Viroscience, Erasmus MC, Wytemaweg 80, Rotterdam, Zuid Holland 3015 CE, The Netherlands
Original Host Homo sapiens Sample Type respiratory tract samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 RT-PCR kits Used for respiratory viral diagnostics. 26100374 View Related Publication
2 Nasal washings, sputum, throat swabs, and bronchoalveolar lavages Respiratory tract samples obtained during routine clinical practice.
3 C-reactive protein (CRP) levels testing kits Used to assess the likelihood of bacterial co-infection upon admission.
4 Supplemental Oxygen Provided as respiratory support for patients.
5 Mechanical Ventilation equipment Provided as invasive respiratory support for critically ill patients.
6 Extracorporeal Membrane Oxygenation (ECMO) equipment Critical support for patients with severe respiratory failure.
7 Antibiotics Administered to all patients during PICU admission.
8 Random RNA and DNA amplification kits Used in combination with NGS for viral metagenomics analysis.
9 454 Life Sciences NGS platform Used for next-generation sequencing of samples.
10 Gram staining reagents Used for evaluation of sputum samples in culture testing.
11 GenBank sequence submitter Storage of sequence data from the study.