ParvoDB ID PV015162 GenBank Accession HQ288042
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 790
Definition Human bocavirus isolate KE-23A8/11 capsid protein (VP1/2) gene, partial cds. Submission Date 2010-09-22
Strain Name KE-23A8/11 Sampling Date 2008-11
Sampling Country Kenya Location Kisumu, Busia, Nairobi, Mombasa,Kericho, and Kisii, Kenya
Submitted By Misigo,D.M., Mwaengo,D.M., Mburu,D.N. and Bulimo,W.D. Submitting Institution Institute of Tropical and Infectious Diseases (UNITID), University of Nairobi, P.O. Box 19676, Nairobi, Nairobi 00202, Kenya
Original Host Homo sapiens Sample Type nasopharyngeal swab
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 LLC-MK2 cell line To culture clinical specimens. 24518633 View Related Publication
2 HEp-2 cell line To culture clinical specimens.
3 Rhabdomyosarcoma (RD) cell line To culture clinical specimens.
4 MDCK cell line To culture clinical specimens.
5 Dubelcco’s modified eagle medium To supplement culture media for cell lines.
6 2% fetal bovine serum To supplement culture media for cell lines.
7 1% antibiotic To supplement culture media for cell lines.
8 Qiagen QIAmp DNA blood mini kit To extract DNA from samples.
9 dNTPs mix To provide nucleotides for the PCR reaction.
10 Taq polymerase To catalyze DNA synthesis during PCR.
11 Ethidium bromide To stain DNA for visualization in agarose gel electrophoresis.
12 1.5% (w/v) agarose To create gels for electrophoresis.
13 1X Tris Borate EDTA buffer pH 8.0 To run the electrophoresis gels.
14 100 bp and 1 Kb DNA ladder (Fermentas) To serve as size references in electrophoresis.
15 Qiagen QIAquick PCR purification kit To purify PCR products before sequencing.
16 Thermo Scientific NanoDrop 2000/2000c spectrophotometer To determine the concentration and purity of DNA.
17 Gene Amp 9600 themocycler (Applied Biosystems) To perform cycle sequencing.
18 Centri–SepTM columns To remove excess deoxy terminator from DNA sequencing products.
19 ABI Prism 3100 Genetic analyzer version 2 (Applied Biosystems) To perform automated sequencing.
20 ABI Prism BigDye Terminator cycle ready reaction kit version 2.0 To prepare DNA for sequencing.