Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV014769 | GenBank Accession | MH828526 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 5447 |
| Definition | Human bocavirus strain vzbov3 large non-structural protein (NS1), small non-structural protein (NP1), large structural protein (VP1), and small structural protein (VP2) genes, complete cds. | Submission Date | 2018-08-31 |
| Strain Name | vzbov3 | Sampling Date | 2015-04-16 |
| Sampling Country | Vietnam | Location | Dong Thap Province, Vietnam |
| Submitted By | Lu,L., Robertson,G., Ivens,A. and Woolhouse,M. | Submitting Institution | Centre for Immunity, Infection and Evolution, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, United Kingdom |
| Original Host | Homo sapiens | Sample Type | respiratory samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | RT-PCR | To screen for 14 common respiratory viruses in respiratory samples | 32499763 | View Related Publication |
| 2 | 4-tube real time multiplex RT-PCR | To screen for HMPV, Human parainfluenza virus (HPIV group 1–4), HBoV, EV, HRV (A, B, and C), Coronavirus (CoV), HAdV, and Human parechovirus (HPeV) | ||
| 3 | Single-target RT-PCR | To test for RSV (type A and B), IAV (H1 and H3) and IBV | ||
| 4 | Metagenomic sequencing | To process clinical samples for further analysis including identifying and assembling viral genomes |