ParvoDB ID PV014644 GenBank Accession MZ468547
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 3303
Definition Human bocavirus strain HR1046-19, partial genome. Submission Date 2021-06-25
Strain Name HR1046-19 Sampling Date from 2017-05 to 2021-03
Sampling Country Croatia Location two different hospitals in Croatia, Croatia
Submitted By Ljubin Sternak,S. and Slovic,A. Submitting Institution Centre for Research and Knowledge Transfer in Biotechnology, University of Zagreb, Rockefellerova 10, Zagreb 10000, Croatia
Original Host Homo sapiens Sample Type respiratory samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Viral transport medium (UTM, Copan, Italy) Transport and preservation of respiratory specimens collected from patients. 34578309 View Related Publication
2 RibospinvRD Kit (GeneAll Biotechnology, Seoul, Korea) Isolation of viral DNA and RNA from viral transport medium.
3 Seeplex RV15 detection kit (Seegene Inc., Seoul, Korea) Multiplex PCR amplification of specific viral nucleic acid from samples.
4 MCE-202 MultiNA device (Shimadzu, Kyoto, Japan) Detection of PCR products by microchip electrophoresis.
5 Multiplex-tandem polymerase chain reaction kit for respiratory viruses (MT-PCR, AusDiagnostics Pty Ltd., Sydney, NSW, Australia) Multiplex PCR detection of respiratory viruses, including HBoV.
6 Quick-DNA Viral Kit (Zymo Research) Re-extraction of viral DNA from HBoV positive samples.
7 Phusion polymerase (New England Biolabs) PCR amplification of near-complete HBoV genome or fragments.
8 1% agarose gels Separation of PCR amplification products.
9 Nucleospin Gel and PCR Clean-up Kit (Macherey-Nagel, Dueren, Germany) Purification of excised PCR products from agarose gels.
10 QuantiFluor ONE dsDNA System (Promega, Madison, WI, USA) Quantification of purified PCR products.
11 NEBNext Ultra II FS DNA Library prep kit (New England Biolabs, Ipswich, Great Britain) Preparation of DNA libraries for next-generation sequencing.
12 2100 Bioanalyzer and High Sensitivity DNA Kit (Agilent, Santa Clara, CA, USA) Quality check of prepared DNA libraries.
13 MiniSeq Mid Output Kit (Illumina, San Diego, CA, USA) Sequencing of DNA libraries to obtain paired-end reads.