Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV013894 | GenBank Accession | GQ178067 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 513 |
| Definition | Human bocavirus isolate BR3399_SP08 VP1/VP2 gene, partial cds. | Submission Date | 2009-05-19 |
| Strain Name | BR3399_SP08 | Sampling Date | from 2018-01 to 2018-12 |
| Sampling Country | Brazil | Location | Brazil |
| Submitted By | Oliveira,D.B.L., Barbosa,M.L., Valadares,M.P.O., Caldeira,R.N., Durigon,G.S., Berezin,E.N. and Durigon,E.L. | Submitting Institution | Microbiologia, Instituto de Ciencias Biomedicas II, Av. Prof Lineu Prestes 1374, Sao Paulo 5508-900, Brazil |
| Original Host | Homo sapiens | Sample Type | nasopharyngeal aspirates |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Nasopharyngeal aspirates (NPAs) | Collected from children to screen for respiratory viruses, including HBoV. | 20619493 | View Related Publication |
| 2 | Liquid nitrogen | For storing NPAs to preserve the samples for later testing. | ||
| 3 | Primers for PCR | Used to detect respiratory viruses, including HBoV, via PCR and RT-PCR assays. | ||
| 4 | Primers targeting the NS1 gene for PCR | Specifically used for detecting HBoV. | ||
| 5 | Primers for VP1/VP2 gene region (HBoVP1 and HBoVP2) | Used for amplifying HBoV-positive samples in a second PCR step. |