Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV013159 | GenBank Accession | KR347116 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 228 |
| Definition | Human bocavirus 1 non-structural protein 1 (NS1) gene, partial cds. | Submission Date | 2015-04-29 |
| Strain Name | SW1087-2012/Pondicherry/India | Sampling Date | from 2012-01 to 2015-03 |
| Sampling Country | India | Location | Pondicherry, India |
| Submitted By | Nandhini,G. and Sujatha,S. | Submitting Institution | Microbiology, Jawaharlal Institute of Postgraduate Medical Education & Research (JIPMER), Dhanvantri nagar, Puducherry, Puducherry 605 006, India |
| Original Host | Homo sapiens | Sample Type | respiratory specimens |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Flocked nylon swabs | Used for collecting respiratory specimens | 32346655 | View Related Publication |
| 2 | Hi-viral transport medium (HiMedia, Mumbai, India) | Used to transport respiratory specimens to the laboratory | ||
| 3 | QIAamp viral RNA/DNA extraction kit (Qiagen, Germany) | Used for viral nucleic acid extraction | ||
| 4 | StepOne real-time PCR system (Applied Biosystems, USA) | Used for performing Real-time PCR reactions | ||
| 5 | AgPath-IDTM One Step RT-PCR kit | Used for one-step reverse transcriptase PCR for RNA or DNA | ||
| 6 | ABI 3730 Genetic Analyzer (Applied Biosystems, USA) | Used for sequencing of representative viral isolates |