ParvoDB ID PV011949 GenBank Accession OK244684
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate2 Sequence Length 510
Definition Human bocavirus 4 isolate CMW37/17 capsid protein (VP1) gene, partial cds. Submission Date 2021-09-21
Strain Name CMW37/17 Sampling Date 2017-05
Sampling Country Thailand Location Chiang Mai, Thailand, Thailand
Submitted By Kumthip,K., Khamrin,P. and Maneekarn,N. Submitting Institution Department of Microbiology, Faculty of Medicine, Chiang Mai University, 110 Intawaroros Road, Sriphoom, Muang, Chiang Mai, Chiang Mai 50200, Thailand
Original Host Homo sapiens Sample Type Environmental water samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Polyethylene glycol (PEG) 6000 Used to concentrate virus particles in environmental water samples by precipitation. 34937184 View Related Publication
2 NaCl Used in combination with PEG 6000 to aid in precipitation of virus particles from environmental water samples.
3 RNase-free water Used to resuspend the pellet of virus particles after centrifugation.
4 Geneaid Viral Nucleic Acid Extraction Kit Used to extract viral nucleic acid from the concentrated samples.
5 GoTaq DNA Polymerase (Promega, USA) Used in nested PCR for amplification of the VP1/VP2 region of the HBoV genome.
6 First-round primers AK-VP-F1 and AK-VP-R1 Used in the first round of nested PCR to amplify the VP1/VP2 region of the HBoV genome.
7 Second-round primers AK-VP-F2 and AK-VP-R2 Used in the second round of nested PCR to further amplify the VP1/VP2 region of the HBoV genome.
8 Gel/PCR DNA Fragment Extraction Kit (Geneaid, Taiwan) Used to purify the PCR products before sequencing.
9 NanoDrop Spectrophotometer Used to check the DNA quality and quantify the purified PCR product.
10 Sufficient and optimal concentration of purified PCR product (20 ng/mL) with AK-VP-F2 primer Used for direct nucleotide sequencing.
11 BLAST (Basic Local Alignment Search Tool) Used to compare nucleotide sequences of HBoV strains detected in this study with reference sequences in the NCBI GenBank database.
12 MEGA X software Used to construct a phylogenetic tree of partial VP1/VP2 regions.