ParvoDB ID PV011556 GenBank Accession MW759054
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 543
Definition Human bocavirus isolate NCIPD 1227 capsid protein VP1 and capsid protein VP2 genes, partial cds. Submission Date 2021-03-15
Strain Name 1227/BoV/BG/2018 Sampling Date 2018-10-25
Sampling Country Bulgaria Location Bulgaria
Submitted By Korsun,N.S., Trifonova,I.T. and Angelova,S.G. Submitting Institution Virology, National Centre of Infectious and Parasitic Diseases, 44A Stoletov Blvd, Sofia 1233, Bulgaria
Original Host Homo sapiens Sample Type nasopharyngeal/oropharyngeal swabs
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Sterile viral transport media For placing nasopharyngeal and oropharyngeal specimens. 34819956 View Related Publication
2 ExiPrep Dx Viral DNA/RNA kit (BioNeer, Daejeon, Republic of Korea) For extraction of viral DNA and RNA.
3 SuperScript III Platinum One-Step qRT-PCR System (Invitrogen, ThermoFisher Scientific, Waltham, MA, USA) For performing real-time RT-PCR assays for influenza viruses.
4 International Reagent Resource (IRR), USA For providing primers and probes for influenza virus testing.
5 AgPath-ID One-Step RT-PCR kit (Applied Biosystems, ThermoFisher Scientific, Waltham, MA, USA) For performing singleplex real-time PCR assays for noninfluenza viruses.
6 AmpliRun DNA/RNA Amplification Controls (Vircell, Granada, Spain) Positive controls for noninfluenza virus targets.
7 Qiagen One-Step RT-PCR kit (Qiagen, Hilden, Germany) For conventional PCR amplification of hBoV VP1/VP2 gene region.
8 PureLink Quick Gel Extraction kit (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) For extracting and purifying PCR amplicons.
9 BigDye Terminator v1.1 Cycle Sequencing Kit (Applied Biosystems, Thermo Fisher Scientific, Waltham, MA, USA) For sequencing the purified amplicons in both directions.