ParvoDB ID PV011550 GenBank Accession EF151137
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 1536
Definition Human parvovirus B19 isolate 903321 nonstructural protein gene, partial cds. Submission Date 2006-11-29
Strain Name 903321 Sampling Date from 2005-03 to 2007-03
Sampling Country Netherlands Location Netherlands
Submitted By Koppelman,M., Rood,I. and Cuypers,T. Submitting Institution Viral Diagnostics, Sanquin, Plesmanlaan 125, Amsterdam, NH 1066 CX, Netherlands
Original Host Homo sapiens Sample Type blood samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 NucliSens extractor (NucliSens, bioMerieux, Boxtel, The Netherlands) Isolation of nucleic acid from manufacturing pools, test pools, and individual donations. 17845257 View Related Publication
2 LightCycler instrument (Roche Diagnostics, Mannheim, Germany) Running real-time polymerase chain reaction (PCR) assays.
3 B19V DNA quantification assay from Roche Amplification of a fragment within the non-structural protein (NS1) gene for quantitative detection of B19V DNA.
4 Primers EVF and EVR Used in an in-house developed B19V DNA assay for reliable detection and quantification of B19V genotypes 1, 2, and 3.
5 Modified hydrolysis probe with LNA bases at specific sites (5' (FAM)- AAC.CCC.GCG.CTC.TAG.TAC-(BBQ3) 3') Used in the in-house assay to improve robustness and detection accuracy of B19V DNA.
6 ABI PRISM BigDye terminator cycle sequencing ready reaction kit (version 3.0) (Applied Biosystems/Hitachi, Nieuwerkerk a/d IJssel, The Netherlands) Sequencing of purified PCR products.
7 ABI PRISM 3130xl Genetic Analyzer Performing sequence analysis of PCR products.
8 SYBR green Staining of PCR products for agarose gel electrophoresis to analyze the intensity of amplified DNA bands.
9 Panel of primers (multiple forward and reverse primers listed in Table 1) Used for sequencing specific regions of B19V to identify genotypic differences and mismatches.