Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV011103 | GenBank Accession | JQ267788 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate2 | Sequence Length | 516 |
| Definition | Human bocavirus 3 isolate CMH-N008-11 capsid protein VP1 gene, partial cds. | Submission Date | 2011-12-09 |
| Strain Name | CMH-N008-11 | Sampling Date | 2011-01 |
| Sampling Country | Thailand | Location | Chiang Mai, Thailand, Thailand |
| Submitted By | Khamrin,P., Malasao,R., Chaimongkol,N., Ukarapol,N., Kongsricharoern,T., Okitsu,S., Hayakawa,S., Ushijima,H. and Maneekarn,N. | Submitting Institution | Department of Microbiology, Faculty of Medicine, Chiang Mai University, 110 Inthawarorose, Sripoom, Muang, Chiang Mai 50200, Thailand |
| Original Host | Homo sapiens | Sample Type | fecal specimens |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | 10% fecal suspension | Source material for viral genome extraction. | 22333841 | View Related Publication |
| 2 | QIAamp viral RNA Mini Kit (Qiagen, Germany) | Extraction of viral genomes from fecal suspension. | ||
| 3 | A forward primer AK-VP-F1 | First PCR primer for detecting bocavirus. | ||
| 4 | A reverse primer AK-VP-R1 | First PCR primer for detecting bocavirus. | ||
| 5 | AK-VP-F2 nested PCR primer | Nested PCR primer for further detection of the bocavirus. | ||
| 6 | AK-VP-R2 nested PCR primer | Nested PCR primer for further detection of the bocavirus. | ||
| 7 | Wizard SV Gel and PCR Clean-Up System (Promega, Madison, WI) | Purification of PCR amplicons. | ||
| 8 | BigDye Terminator Cycle Sequencing Kit (Applied Biosystems, Foster City, CA) | Sequencing the PCR products on an automated sequencer. |