ParvoDB ID PV010810 GenBank Accession MF680549
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate2 Sequence Length 5184
Definition Human bocavirus strain CUK-BC20, complete genome. Submission Date 2017-08-17
Strain Name CUK-BC20 Sampling Date 2016-07-10
Sampling Country South Korea Location South Korea
Submitted By Kang,L.-H. and Paik,S.-Y. Submitting Institution Department of Biomedical Sciences, College of Medicine, The Catholic University of Korea, 222 Banpo-daero Seocho-gu, Seoul, Seoul 137-701, Korea
Original Host Homo sapiens Sample Type stool sample
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 QIAamp DNA mini kit (Qiagen, Hilden, Germany) For viral DNA extraction from stool samples. 29534770 View Related Publication
2 2× Emerald Amp PCR Master Mix (TaKaRa, Shiga, Japan) For performing polymerase chain reaction (PCR).
3 5′ RACE System for RACE Version 2.0 Kit (Invitrogen, Carlsbad, CA, USA) For rapid amplification of cDNA ends (RACE) to determine the 5′-ends of HBoV genomic DNA.
4 3′-Oligo (dT)-anchor-R For reverse transcription to synthesize cDNA to determine the 3′-end of the HBoV genomic DNA.
5 HiYield Gel/PCR DNA Fragments Extraction Kit (RBC, Taipei, Taiwan) For extraction of PCR products.
6 pGEM-T Easy Vectors (Promega, Madison, WI, USA) For cloning PCR products.
7 Escherichia coli DH5α competent cells (RBC) For transformation of cloned vectors.
8 Luria–Bertani agar plates (Duchefa, Haarlem, the Netherlands) containing X-gal, isopropyl-β-D-thiogalactoside, and ampicillin For selection of transformed E. coli clones.
9 Luria–Bertani broth (Duchefa) For incubation of selected clones.
10 HiYield Plasmid Mini Kit (RBC) For purification of plasmid DNA.
11 Ethidium bromide For staining gels in electrophoresis to visualize PCR products.