Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV010799 | GenBank Accession | LC651178 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 5490 |
| Definition | Human bocavirus 1 HBoV/Fukushima/OR65/2020 DNA, complete genome. | Submission Date | 2021-09-13 |
| Strain Name | HBoV/Fukushima/OR65/2020 | Sampling Date | 2020 |
| Sampling Country | Japan | Location | Fukushima, Japan |
| Submitted By | Kakizaki,M., Kume,Y., Suwa,R., Kawase,M., Ono,T., Chishiki,M., Norito,S., Sakuma,H., Suzuki,S., Hosoya,M., Takeda,M., Hashimoto,K. and Shirato,K. | Submitting Institution | Contact:Kazuya Shirato National Institute of Infectious Diseases, Laboratory of Respiratory Virus Vaccines, Department of Virology III; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan URL :https://www.niid.go.jp/niid/ja/from-vir3.html |
| Original Host | Homo sapiens | Sample Type | Nasopharyngeal swab specimens |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Human bronchial tracheal epithelial cells (HBTEC-ALI) | Used for virus isolation using an air-liquid interface culture. | 35049344 | View Related Publication |
| 2 | Nasopharyngeal swab specimens | Collected from pediatric inpatients for detecting HBoV1 positive samples. | ||
| 3 | QIAamp viral RNA minikit (Qiagen, Hilden, Germany) | Extraction of nucleic acids from virus stock. | ||
| 4 | NEBNext Ultra II RNA library preparation kit for Illumina (New England Biolabs, Ipswich, MA, USA) | Preparation of libraries for next-generation sequencing. |