ParvoDB ID PV009424 GenBank Accession AB030694
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 4803
Definition Human parvovirus B19 NS1, VP1, VP2 genes for non-structural protein NS1, capsid protein VP1, capsid protein VP2, complete cds, isolate: Rm. Submission Date 1999-07-29
Strain Name Rm Sampling Date 2009-09-16
Sampling Country Japan Location Japan
Submitted By Ishii,K.K. Submitting Institution Contact:Keiko K Ishii Tohoku University School of Medicine, Department of Molecular Diagnostics; 1-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi 980-8574, Japan
Original Host None Sample Type serum samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Collagenase type I To treat synovial tissue and facilitate the release of synovial cells. 15383603 View Related Publication
2 Proteinase K To extract DNA from synovial cells.
3 Phenol-chloroform To purify DNA during extraction from synovial cells.
4 PCR Primer Set (5'-TTCCCGCCTTATGCAAATGGGCAG-3' and 5'-GTGTTAGGCTGTCTTATAGGTAC-3') To amplify almost the whole B19 genome including coding regions NS1, VP1, and VP2.
5 pGEM-T vector To clone the amplified B19 genome fragment for sequencing.
6 7-deaza-dGTP cycle sequencing kit For sequencing the cloned B19 genome.
7 PCR Primer Set (5'-CGCCTGGAACACTGAAACCC-3' and 5'-AGCCTGCACCTGAGGAGTGA-3') To amplify the NS1 region directly from synovial DNA samples.
8 Calf type II collagen (CII) For immunization of mice to induce collagen-induced arthritis.
9 CFA (Complete Freund's Adjuvant) containing Mycobacterium tuberculosis strain H37 Rv To emulsify CII for initial immunization at the tail base.
10 IFA (Incomplete Freund's Adjuvant) To emulsify CII for the booster immunization of mice.
11 ISOGEN reagent For total RNA isolation from mouse tissues.
12 RT-PCR (Reverse Transcription-PCR) kit Ver. 2.1 To detect NS1 mRNA in tissue samples.
13 10% Neutral buffered formalin To fix tissues for histopathological examination.
14 5% EDTA-2Na solution To decalcify fixed joint tissues.
15 H&E (Hematoxylin and Eosin) To stain tissue sections for histopathological examination.
16 Human monoclonal anti-NS1 Ab For immunohistochemical staining to detect NS1 protein in tissues.
17 Human monoclonal anti-VP1 Ab For immunohistochemical staining to detect VP1 protein in tissues.
18 Biotinylated anti-human IgG Fc fragment To detect human monoclonal antibodies in immunohistochemical staining.
19 Streptavidin To detect biotin-labeled antibodies in immunohistochemical staining.
20 3,3'-diaminobenzidine (DAB) To visualize peroxidase activity in immunohistochemical staining.
21 ELISA plates For measuring serum TNF-α concentration and anti-CII antibody titers.
22 Goat anti-mouse IgG with HRP To detect mouse antibodies in ELISA.
23 o-phenylendiamine and H2O2 To develop color in ELISA for detecting bound antibodies.
24 [3H]Thymidine To measure cell proliferation response in a tritiated thymidine incorporation assay.