ParvoDB ID PV009316 GenBank Accession KC544963
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 2044
Definition Human bocavirus 1 isolate AR2009_416 VP1 (VP1) and VP2 (VP2) genes, complete cds. Submission Date 2013-01-29
Strain Name AR2009_416 Sampling Date 2009
Sampling Country Argentina Location Co´rdoba, Argentina
Submitted By Insfran,C., Ghietto,L. and Adamo,M. Submitting Institution Instituto de Virologia, Universidad Nacional de Cordoba, Calle Enf. Gordillo Gomez S/N - Ciudad Universitaria, Cordoba, Cordoba 5016, Argentina
Original Host Homo sapiens Sample Type Respiratory specimens
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 guanidinium buffer and silica Nucleic acids extraction from 100 ll of NPA or NPS specimens. 25269520 View Related Publication
2 Platinum Taq DNA polymerase (Invitrogen) Used for amplification in real-time PCR (Applied Biosystems 7500 Real-Time PCR System) of the NP1 gene for relative quantification of HBoV1.
3 SYBR Green (Invitrogen S-7563) Added to the amplification reaction mixture for detection in real-time PCR.
4 AgPath-IDTM One-Step RT-PCR Reagents (Applied Biosystems) qRT-PCR for detection of other viral pathogens including Flu A and B viruses, PIV1, -2 and -3, AdV, RSV and MPV in HBoV-positive samples.
5 dual-labeled FAM-BHQ1 probes Used in PCR assay as part of the detection system for various respiratory pathogens.
6 QIAGEN PCR cleanup kit Purification of PCR products prior to sequencing.
7 ABI PRISM BigDye Terminator v. 3.1 (PE Applied Biosystems) Used for sequencing reactions of amplified NP1 and VP1 regions.
8 ethidium bromide Staining of agarose gels to resolve PCR products visually.