ParvoDB ID PV009229 GenBank Accession LT601407
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate2 Sequence Length 300
Definition Human bocavirus 3 partial VP1 gene for capsid protein, strain 2179/2014IT. Submission Date 2016-06-15
Strain Name 2179/2014IT Sampling Date from 2014 to 2015
Sampling Country Italy Location Italy
Submitted By Iaconelli,M., Divizia,M., Della Libera,S., Di Bonito,P. and La Rosa,G. Submitting Institution Istituto Superiore di Sanita, Department of Environment and Primary Prevention, Viale Regina Elena 299, Rome 00161, ITALY
Original Host Homo sapiens Sample Type Grab wastewater samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Murine norovirus (MNV1) Seeded in wastewater samples as a sample process control. 27311692 View Related Publication
2 Glycine pH 9.5 (2.5 M) Treated wastewater samples to facilitate virus concentration.
3 Chloroform Used to treat samples and facilitate viral concentration.
4 NucliSENS easyMAG (BioMerieux, Marcy l’Etoile, France) semi-automated extraction system with magnetic silica Used for viral nucleic acid extraction from chloroform-treated samples.
5 MyTaqTM Red Mix PCR kit (Bioline, London, UK) Provided reagents for performing nested PCR assays.
6 Montage PCRm96 Micro-well Filter Plate (Millipore, Billerica, Mass) Used for purification of PCR products.
7 pGEM-T Vector Systems (Promega) Used for cloning PCR amplicons in pGEM-T vector.
8 NEB Turbo Competent E. coli (BioLabs inc) Used for transformation during cloning of PCR amplicons.
9 One-step FastPlasmid mini purification kit (5Prime.com) Used for plasmid DNA extraction from grown colonies.
10 ABI files Obtained by sequencing, aligned, and assembled into consensus sequences using software.
11 SensiMixT II Probe No-ROX Kit (Bioline) Used for real-time PCR reactions.
12 Ethidium bromide-stained agarose gel Quantified DNA plasmids during plasmid preparation.
13 Primers and probe targeting the VP1/VP2 gene Designed for real-time PCR assay.