Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV007870 | GenBank Accession | MH910506 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate1 | Sequence Length | 760 |
| Definition | Human bocavirus isolate Iraq3 viral capsid protein (vp1/vp2) gene, partial cds. | Submission Date | 2018-09-10 |
| Strain Name | Iraq3 | Sampling Date | from 2017 to 2018 |
| Sampling Country | Iraq | Location | Iraq |
| Submitted By | Hasan,D.A., Hussein,A.A., Al-Mayah,Q.S. and Aufi,I.M. | Submitting Institution | Medical microbiology, Diyala university college of medicine, Al Baladiyat, Baghdad, Baghdad 10061, Iraq |
| Original Host | Homo sapiens | Sample Type | nasophryngeal swab |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Sigma Virocult Swabs | Collection of nasopharyngeal samples with viral transport medium | https://www.researchgate.net/publication/339982318_Phylogenetic_Analysis_of_Human_Bocavirus_Isolated_from_Children_with_Lower_Respiratory_Tract_Infections_in_Baghdad_Iraq | View Related Publication |
| 2 | Commercial Kit (Instant virus DNA/RNA, Cat. No. 845-KS-4500250, German) | DNA extraction from nasopharyngeal swab specimens | ||
| 3 | Primers (VP-A, VP-B, VP-C) | Amplification of fragments of human bocavirus VP1/2 capsid gene | ||
| 4 | TBE buffer | Preparation of a stock solution of primers | ||
| 5 | Distilled water | Preparation of working solution and reaction mixture in PCR | ||
| 6 | Master Mix | Facilitate PCR amplification as part of the mixture | ||
| 7 | Ethidium bromide | Staining Gel electrophoresis products for visualization under UV light |