Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV007648 | GenBank Accession | GQ281565 |
| Subfamily | Parvovirinae | Genus | Bocaparvovirus |
| Species | Bocaparvovirus primate2 | Sequence Length | 483 |
| Definition | Human bocavirus 2 isolate ST411 nonstructural protein NS1 gene, partial cds. | Submission Date | 2009-06-17 |
| Strain Name | ST411 | Sampling Date | 2009-01-12 |
| Sampling Country | South Korea | Location | Sanggyepaik Hospital, Seoul,Korea, South Korea |
| Submitted By | Han,T.-H., Chung,J.-Y., Park,S.-H. and Hwang,E.-S. | Submitting Institution | Department of Laboratory Medicine and Pediatrics, Sanggyepaik Hospital, Inje University College of Medicine, 761-1 Sanggye-7-Dong, Nowon-Gu, Seoul 139-707, Republic of Korea |
| Original Host | Homo sapiens | Sample Type | stool samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Phosphate-buffered saline | Dilution of stool samples for preparation. | 19862470 | View Related Publication |
| 2 | Rotaclone ELISA kit | Identification of rotavirus in stool samples. | ||
| 3 | Adenoclone 40/41 ELISA kit | Identification of adenovirus 40 and 41 in stool samples. | ||
| 4 | Tri-reagent | Extraction of total RNA from stool suspensions. | ||
| 5 | DEPC-treated distilled water | Dissolving final RNA pellets after extraction. | ||
| 6 | QIAamp DNA stool Kit | DNA extraction from stool samples. | ||
| 7 | Primers (SLV5317, SLV5749) | Detection of sapovirus via PCR. | ||
| 8 | Primers (Mon 340, Mon 348) | RT-PCR detection of human astrovirus (HAstV). | ||
| 9 | QIAquick | Amplicon purification before sequencing. | ||
| 10 | BigDye Terminator v3.1 Cycle Sequencing kit | Sequencing of PCR products. |