ParvoDB ID PV007627 GenBank Accession EF441537
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 310
Definition Human bocavirus strain SE-06-05-53 noncapsid protein 1 gene, partial cds. Submission Date 2007-02-15
Strain Name SE-06-05-53 Sampling Date from 2005-01 to 2006-12
Sampling Country South Korea Location Sanggyepaik Hospital, in Seoul, South Korea
Submitted By Han,T.H., Chung,J.Y., Lee,J.I. and Song,M.O. Submitting Institution Department of Pediatrics, Inje University Sanggye-Paik Hospital, 761-1 Sanggye7-Dong, Nowon-Gu, Seoul 139-707, Korea
Original Host None Sample Type stool samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 MacConkey agar To isolate Escherichia coli. 17763319 View Related Publication
2 Salmonella-shigella agar To isolate Salmonella and Shigella.
3 Charcoal-cefoperazone-desoxycholate agar To isolate Campylobacter.
4 Thiosulfate-citrate–bile salts–sucrose agar To isolate Vibrio.
5 Cefsulodin-irgasan-novobiocin agar To isolate Yersinia.
6 Tryptose-sulfite–cycloserine agar To isolate Clostridium species.
7 Phosphate-Buffered Saline (PBS) To dilute stool samples for virus detection.
8 Rotaclone and Adenoclone 40/41 (Meridian Bioscience) To identify rotavirus and adenoviruses 40 and 41 using ELISA.
9 Tri-reagent (Molecular Research Center) To extract total RNA from stool suspensions.
10 Diethyl pyrocarbonate–treated distilled water To dissolve final RNA pellets for RT reaction.
11 Taq DNA polymerase (Takara) To perform PCR amplification.
12 QIAamp DNA stool Kit (Qiagen) To extract DNA from stool samples.
13 QIAquick (Qiagen) To purify PCR amplicon.
14 BigDye Terminator Cycle Sequencing kit (version 3.1; Applied Biosystems) To sequence PCR products.