Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV007251 | GenBank Accession | MT108216 |
| Subfamily | Parvovirinae | Genus | Erythroparvovirus |
| Species | Erythroparvovirus primate1 | Sequence Length | 4349 |
| Definition | UNVERIFIED: Erythroparvovirus primate1 isolate HSJN240 sequence. | Submission Date | 2020-02-25 |
| Strain Name | HSJN240 | Sampling Date | |
| Sampling Country | Mexico | Location | Mexico |
| Submitted By | Guzman-Solis,A.A., Blanco-Melo,D., Villa-Islas,V., Bravo-Lopez,M.J., Sandoval-Velasco,M., Wesp,J.K., Gomez-Valdes,J.A., Moreno-Cabrera,Mdl.L., Meraz-Moreno,A., Solis-Pichardo,G., Schaaf,P., tenOever,B. and Avila-Arcos,M.C. | Submitting Institution | International Laboratory for Human Genome Research, Universidad Autonoma de Mexico, Blvd. 3001, Campus UNAM 3001., Queretaro, Queretaro 76230, Mexico |
| Original Host | human | Sample Type | Dental samples (premolars and molars) |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | NaClO (70%) and ethanol (70%) | Used for superficial cleaning of teeth | 34350829 | View Related Publication |
| 2 | NaClO (70%) and ethanol (70%) | Exposed to UV light for sterilization | ||
| 3 | HCl 0.5 M solution | Used during digestion of tooth root powder | ||
| 4 | NaOH 0.01 M and HCl 0.2 M | Used for further treatment during DNA extraction | ||
| 5 | Biotinylated single-stranded RNA probes | Designed to capture sequences from diverse human viral pathogens for in-solution enrichment assay | ||
| 6 | 0.1 N acetic acid | Used in the first leaching step to clean tooth enamel samples | ||
| 7 | 1 N acetic acid | Used in the second leaching step to clean tooth enamel samples | ||
| 8 | 8 N HNO3 | Used to dissolve residue from leaching process | ||
| 9 | Sr-Spec (EICHROM) ion exchange column | Used to extract Sr from teeth and bone samples |