ParvoDB ID PV006589 GenBank Accession KY629422
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 1936
Definition Bocaparvovirus primate1 isolate HBoV1s6 truncated nonstructural protein (NS1) gene, complete cds. Submission Date 2017-02-16
Strain Name HBoV1s6 Sampling Date 2015-04-07
Sampling Country Argentina Location Argentina
Submitted By Ghietto,L.M. and Adamo,M.P. Submitting Institution Instituto de Virologia, Universidad Nacional de Cordoba, Calle Enf. Gordillo Gomez S/N - Ciudad Universitaria, Cordoba 5016, Argentina
Original Host human Sample Type nasopharyngeal aspirates
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 DEAE-dextran To supplement Caco-2 cultures and enhance virus infection. 28777951 View Related Publication
2 Eagle's Minimum Essential Medium (EMEM) (GIBCO) Culture medium for preparing the inoculum and maintaining cell cultures.
3 Penicillin-streptomycin Antibiotic supplement in EMEM to prevent bacterial contamination.
4 Gentamicin Alternative antibiotic supplement in EMEM to prevent bacterial contamination.
5 Glutamine Supplement in EMEM to support cell growth.
6 Fetal bovine serum (FBS) Supplement in EMEM for complete growth medium.
7 Trypsin and EDTA To trypsinize and reseed cell monolayers.
8 Phosphate-buffered saline (PBS) For washing cultures.
9 Axyprep Body Fluid Viral DNA/RNA Miniprep Kit (Axygen Bioscience) Nucleic acid extraction from supernatant and monolayers.
10 Platinum Taq DNA polymerase (Invitrogen) For qPCR and PCR reactions.
11 SYBR Green (Invitrogen S-7563) Fluorescent dye for qPCR.
12 Silver solution (0.11 M AgNO3) Staining PCR products in polyacrylamide gels.
13 Methanol Fixing cell monolayers for staining.
14 Hematoxylin-eosin Staining fixed cell monolayers.
15 Paraformaldehyde Fixing cells for immunofluorescence assay (IFA).
16 NP40 Permeabilizing cells for IFA.
17 Bovine serum albumin Blocking solution in IFA.
18 FITC-anti-human IgG Secondary antibody for IFA.
19 FluorSave (EMD Millipore) Mounting medium for IFA slides.
20 GelRed (Biotum) Staining PCR products in agarose gels.
21 QIAGEN PCR cleanup kit Purification of PCR products.
22 ABI PRISM BigDye Terminator v. 3.1 (PE Applied Biosystems) Cycle-sequencing for DNA sequencing analysis.