ParvoDB ID PV005890 GenBank Accession DQ112362
Subfamily Parvovirinae Genus Tetraparvovirus
Species Tetraparvovirus primate1 Sequence Length 222
Definition Human parvovirus 5 ORF2 gene, partial cds. Submission Date 2005-06-30
Strain Name 10627 Sampling Date
Sampling Country United States of America Location United States of America
Submitted By Fryer,J.F., Kapoor,A., Minor,P.D., Delwart,E. and Baylis,S.A. Submitting Institution Virology, NIBSC, Blanche Lane, South Mimms, Potters Bar, Hertfordshire EN6 3QG, UK
Original Host Homo sapiens Sample Type plasma samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Primers PV4ORF1F (5′-AAGACTACATACCTACCTGTG-3′) and PV4ORF1R (5′-GTGCCTTTCATATTCAGTTCC-3′) Designed to amplify a 220-bp region of the ORF1 of PARV4. 16494735 View Related Publication
2 1× PCR buffer II (PE Applied Biosystems, Warrington, UK) Buffer used in PCR reactions.
3 200 μmol/L each deoxynucleoside triphosphate Building blocks for DNA synthesis in PCR.
4 2 mmol/L MgCl2 Cofactor required for the DNA polymerase enzyme activity during PCR.
5 10 pmol each primer Primers for initiating DNA synthesis in PCR.
6 2.5 U AmpliTaq Gold DNA polymerase (PE Applied Biosystems) DNA polymerase enzyme used in PCR.
7 Agarose gel electrophoresis Method to analyze PCR amplicons and compare them to known size markers.
8 pT7 Blue vector (Novagen, Darmstadt, Germany) Vector used for cloning the PARV4 control sequences.
9 LightCycler FastStart DNA MasterPLUS SYBR green I kit (Roche Applied Science, Mannheim, Germany) Kit used to perform real-time PCR for determining levels of PARV4 DNA.