ParvoDB ID PV005340 GenBank Accession MZ964791
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate2 Sequence Length 315
Definition Human bocavirus 3 isolate water/HBoV3/RE12-17/2017/THA polyprotein gene, partial cds. Submission Date 2021-08-29
Strain Name water/HBoV3/RE12-17/2017/THA Sampling Date 2017-12-13
Sampling Country Thailand Location Bangkok Metropolitan Region, Thailand
Submitted By Booranathawornsom,T., Pombubpa,K., Tipayamongkholgul,M. and Kittigul,L. Submitting Institution Department of Microbiology, Faculty of Public Health, Mahidol University, 420/1 Ratchawithi Road, Bangkok 10400, Thailand
Original Host Homo sapiens Sample Type ecycled water and sewage sludge samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 QIAamp DNA Mini Kit Viral nucleic acids extraction from recycled water and sewage sludge concentrates. 35367361 View Related Publication
2 QIAamp RNA Extraction Kit (QIAGEN GmbH, Hilden, Germany) Viral nucleic acids extraction from recycled water and sewage sludge concentrates.
3 Primers 2028F [5′GAAATGCTTTCTGCTGYTGAAA-3′] First round PCR amplification for nested PCR targeting the sequence of the capsid proteins VP1/VP2 junction of HBoV.
4 Primers 2029R [5′GTGGATATACCCACAYCAGAA-3′] First round PCR amplification for nested PCR targeting the sequence of the capsid proteins VP1/VP2 junction of HBoV.
5 Primers 2030F [5′GGTGGGTGCTT CCTGGTTA-3′] Nested PCR amplification targeting the sequence of the capsid proteins VP1/VP2 junction of HBoV.
6 Primers 2031R [5′TCTTGRATTTCATTTTCAGACAT-3′] Nested PCR amplification targeting the sequence of the capsid proteins VP1/VP2 junction of HBoV.
7 Taq polymerase (Invitrogen, Carlsbad, CA, USA) Enzymatic amplification of DNA in both first round and nested PCR reactions.
8 Nuclease-free water Component of PCR reaction mixture.
9 QIAquick gel extraction kit (QIAGEN, Valencia, CA, USA) Purifying the HBoV DNA product from nested PCR.