ParvoDB ID PV005253 GenBank Accession GQ243667
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate2 Sequence Length 525
Definition Human bocavirus 2A clone HBoV2A-FL1-3-C5 VP1 (VP1) gene, partial cds. Submission Date 2009-05-19
Strain Name FL1-3 Sampling Date 2009-02-18
Sampling Country United States of America Location Florida, United States of America
Submitted By Blinkova,O., Rosario,K., Li,L., Kapoor,A., Slikas,B., Bernardin,F., Breitbart,M. and Delwart,E. Submitting Institution Molecular virology, Blood Systems Research Institute, 270 Masonic Ave, BSRI, San Francisco, CA 94118, USA
Original Host human Sample Type sewage samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 0.45-μm polyether sulfone membrane filter cartridge (Millipore, Billerica, MA) Filtration of raw sewage samples for virus concentration. 19794058 View Related Publication
2 QIAamp MinElute virus spin kit (Qiagen, Valencia, CA) Nucleic acid extraction from sewage samples.
3 First-strand synthesis SuperScript III reverse transcription kit (Invitrogen, Carlsbad, CA) Synthesis of cDNA from extracted viral RNA.
4 Random hexamers Priming for first-strand cDNA synthesis.
5 ExoSap-IT exonuclease (USB, Cleveland, OH) Treatment of PCR products before sequencing.
6 Taq DNA polymerase (New England Biolabs) Amplification in PCR assays.
7 ThermoPol reaction buffer with 2 mM MgSO4 (New England Biolabs) Reaction buffer for PCR assays.
8 Deoxynucleoside triphosphates (dNTPs) Nucleotide substrates for PCR amplification.
9 Primers HelF1, HelR1, HelF2, HelR2 Targeting conserved 2C (helicase) region in human cardioviruses in nested PCR.
10 Primers DKV-N5U-F1, DKV-N5U-R2, DKV-N5U-F2, DKV-N5U-R3 Targeting 5' untranslated region (5' UTR) in human cosavirus in nested PCR.
11 Primers BocaF1, BocaR1, BocaF2, BocaR2 Targeting VP1 region in human bocavirus in nested PCR.
12 Primers CV-F1, CV-R1, CV-F2, CV-R2 Targeting replicase gene in circoviruses in nested PCR.