ParvoDB ID PV003866 GenBank Accession MW748507
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 1662
Definition Human parvovirus B19 isolate B19V capsid protein 2 (VP2) gene, partial cds. Submission Date 2021-03-13
Strain Name B19V Sampling Date 2019-08
Sampling Country India Location the Southern part of India, India
Submitted By Dayakar,S., Pillai,H.R., Nori,S.R.C., Kalpathodi,S.G., Thulasi,V.P. and Nair,R.R. Submitting Institution Laboratory Medicine & Molecular Diagnostics, Rajiv Gandhi Centre for Biotechnology, KINFRA Film & Video Park, Thiruvananthapuram, Kerala 695585, India
Original Host Homo sapiens Sample Type clinical sample
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 QIAamp DNA Mini Kit Extraction of DNA from EDTA blood 33952289 View Related Publication
2 β-actin PCR assay Testing DNA samples for β-actin to ensure the quality of DNA extraction
3 Gene Amp PCR system 9700 Amplification of B19V NS1 gene in nested PCR
4 E-gel Imager Visualization of electrophoresis amplified products under UV illumination
5 Sanger sequencing reagents Confirming PCR products from nested PCR using cycle sequencing
6 Big Dye Terminator v3.1 Cycle Sequencing Kit Cycle sequencing of PCR products
7 ABI PRISM 7900 sequencer Reading sequencing results
8 Real Star Parvovirus B19V system Performing real-time PCR to detect human B19V from clinical samples and include a heterologous amplification system (internal control)
9 Rotor Gene 5plex HRM real-time platform Real-time PCR amplification
10 NEB Ultra II kit (Cat. No: E7645L) Preparation of whole-genome libraries
11 Agencourt AMPure XP bead (Cat.No: A63882) Cleaning up the adapters ligated DNA fragments
12 Qubit High Sensitivity reagent Quantification of prepared libraries
13 Hi Seq X10 Generating 2X150 bp sequence reads at 100X sequencing depth