ParvoDB ID PV003796 GenBank Accession DQ344483
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 310
Definition Human bocavirus strain KR-MN1269 noncapsid protein 1 gene, complete cds. Submission Date 2005-12-27
Strain Name KR-MN1269 Sampling Date from 2004-07 to 2005-10
Sampling Country South Korea Location South Korea
Submitted By Chung,J.Y., Han,T.H., Kim,C.K. and Kim,S.W. Submitting Institution Department of Pediatrics, Inje University Sanggye-Paik Hospital, 761-1 Sanggye7-Dong, Nowon-Gu, Seoul 139-707, Korea
Original Host None Sample Type nasopharyngeal samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Direct fluorescent-antibody assay kit (Dako Imagen, Cambridgeshire, UK) To detect common respiratory viruses (HRSV, adenovirus, influenza A and B, parainfluenza) after admission. 16965708 View Related Publication
2 QIAamp viral RNA mini kit (Qiagen, Hilden, Germany) To extract viral RNA from each sample.
3 F-gene primers To detect HMPV through reverse transcription–PCR.
4 1-a and 1-b primers To detect human coronavirus NL-63 through reverse transcription–PCR, as previously described.
5 QIAamp DNA Blood Mini Kit (Qiagen GmbH, Hilden, Germany) To extract DNA from the nasopharyngeal aspirates.
6 Primers 188F (5′-GACCTCTG-TAAGTACTATTAC-3′) and 542R (5′-CTCTGT-GTTGACTGAATACA G-3′) For PCR amplification of the NP1 gene.
7 Primers HBoV01.2 (5′-TATGGCCAAGGCAATCGTCCAAG-3′) and HBoV02.2 (5′-GCCGCGTGAACATGAGAAACA-GA-3′) For PCR amplification of the NS1 gene.
8 QIAquick (Qiagen GmbH) To purify the amplified DNA fragments.
9 BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems, Foster City, CA, USA) To sequence the purified amplicons in both directions.