ParvoDB ID PV003650 GenBank Accession EF203920
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 5301
Definition Human bocavirus isolate CU6, complete genome. Submission Date 2007-01-03
Strain Name CU6 Sampling Date 2006-12
Sampling Country Thailand Location Bangkok, Thailand
Submitted By Chieochansin,T., Payungporn,S., Chutinimitkul,S., Hiranras,T., Samransamruajkit,R., Theamboonlers,A. and Poovorawan,Y. Submitting Institution Pediatrics, Chulalongkorn University, Rama IV, Bangkok 10330, Thailand
Original Host None Sample Type nasopharyngeal (NP)
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Transport medium with antibiotics (0.5% BSA, Penicillin G (2 × 106 U/l), Streptomycin 200 mg/l) To collect nasopharyngeal (NP) suctions from infants or children with respiratory illness. 17532505 View Related Publication
2 TRI REAGENT LS (Molecular Research Center, Inc., Cincinnati, OH) To extract HBoV DNA from the nasopharyngeal suction samples.
3 8 mM NaOH To solubilize the extracted HBoV DNA.
4 188F: 5′-GAGCTCTGTAAGTACTATTAC-3′ (nt position 2351–2371) Forward primer for HBoV detection by PCR.
5 542R: 5′-CTCTGTGTTGACTGAATACAG-3′ (nt position 2704–2684) Reverse primer for HBoV detection by PCR.
6 10 μl of 2.5× Eppendorf masterMix (Eppendorf, Hamburg, Germany) PCR mix component for HBoV DNA amplification.
7 Nuclease-free water To adjust the final volume of PCR reaction mixture.
8 Various primers as listed in Table 1 such as F5′, NS1R1, R5′, NS1F1, NP1R2, etc. Primers for complete coding sequence amplification of HBoV.
9 2% agarose gel For gel electrophoresis to analyze PCR products.
10 Perfectprep Gel Cleanup kit (Eppendorf, GmbH, Germany) To purify PCR products from the agarose gel.