ParvoDB ID PV002281 GenBank Accession EU797481
Subfamily Parvovirinae Genus Erythroparvovirus
Species Erythroparvovirus primate1 Sequence Length 401
Definition Human parvovirus B19 isolate 31397 non-structural protein NS1 (NS1) gene, partial cds. Submission Date 2008-06-06
Strain Name 31397 Sampling Date 2006-09
Sampling Country Italy Location Italy
Submitted By Corcioli,F., Zakrzewska,K. and Azzi,A. Submitting Institution Public Health, University of Firenze, viale Morgagni 48, Firenze, FI 50134, Italy
Original Host Homo sapiens Sample Type Tissue and Serum Samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 High Pure PCR Template Preparation Kit (Roche, Basel, Switzerland) DNA extraction from tissue and serum samples. 18814251 View Related Publication
2 TriPure Isolation Reagent (Roche, Basel, Switzerland) RNA extraction from tissue samples.
3 Taq DNA polymerase Ensure the integrity of DNA and check for presence of inhibitors.
4 Beta-globin primers PCR to check DNA integrity and absence of PCR inhibitors.
5 RT-PCR for cellular β-actin mRNA Check the efficiency of RNA extraction.
6 Primers 1905f and 1987r Consensus PCR for B19V detection targeting NS1 gene.
7 Primers e2717f and e2901r Consensus PCR for B19V detection targeting VP1 unique region.
8 Mfe I and Apa I Restriction Fragment Length Polymorphism (RFLP) analysis for genotyping.
9 Genotype 1 specific nested PCR primers Genotype-specific PCR for B19V detection.
10 Genotype 2 specific PCR primers Genotype-specific PCR for B19V detection.
11 BigDye Terminator Cycle Sequencing Kit (Applied Biosystems, Foster City, CA, USA) Sequencing of viral DNA for genotype determination.
12 Primers for real-time PCR with Syber Green Real-time PCR to quantify viral load using Syber Green dye.
13 Quantitect SYBR Green PCR Master Mix (Qiagen, Hilden, Germany) Real-time PCR for quantifying B19V DNA.
14 pGEM-T vector (Promega, Milano, Italy) Cloning of PCR amplification products for creating calibration curves.
15 B19-DNA ISS 0300 (Istituto Superiore di Sanita, Roma, Italy) Evaluating the reliability of PCR reactions.
16 RT-PCR for β-globin gene Calculate the number of cells extracted from tissues.
17 RT-PCR for viral mRNA detection Detect viral mRNAs for structural and non-structural proteins.
18 TaqGold DNA polymerase (Applied Biosystems, Foster City, CA, USA) High-efficiency PCR amplification.