Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV002278 | GenBank Accession | KT268312 |
| Subfamily | Parvovirinae | Genus | Erythroparvovirus |
| Species | Erythroparvovirus primate1 | Sequence Length | 5594 |
| Definition | Primate erythroparvovirus 1 isolate B19V/RJ2929, complete genome. | Submission Date | 2015-07-09 |
| Strain Name | B19V/RJ2929 | Sampling Date | |
| Sampling Country | Brazil | Location | Rio de Janeiro, Brazil |
| Submitted By | Conteville,L.C., Zanella,L.M., Marin,M.A., Filippis,A.M.B., Nogueira,R.M.R., Vicente,A.C.P. and Mendonca,M.C.L. | Submitting Institution | Laboratory of Molecular Genetics of Microorganisms, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Avenida Brasil 4365, RIo de Janeiro 21040-360, Brazil |
| Original Host | Homo sapiens | Sample Type | None |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | Serum Sample | Source material for genome recovery. | 26517666 | View Related Publication |
| 2 | Illumina HiSeq 2500 platform | High-throughput sequencing of the B19V genome. | ||
| 3 | Taxonomic profiling programs | Identification of hits with similarity to B19V. | ||
| 4 | SPAdes 3.5.0 | de novo assembly of the genome (although this is software, it is mentioned as part of the methodological process). | ||
| 5 | Specific PCR | Confirmation of the presence of B19V in the sample. | ||
| 6 | Sanger Sequencing | Further confirmation of the genome sequence. |