ParvoDB ID PV001814 GenBank Accession AM160609
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 1035
Definition Human bocavirus partial VP2 gene for viral capsid protein. Submission Date 2005-11-23
Strain Name MPT1 Sampling Date from 2003-11 to 2004-10
Sampling Country France Location a pediatric unit of the University Hospital of Montpellier, France
Submitted By Foulongne,V. Submitting Institution Foulongne V., Laboratory of Virology, Montpellier University Hospital, 80, avenue A. Fliche, 34295, FRANCE
Original Host None Sample Type nasopharyngeal samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Monoclonal antibodies Used for direct immunofluorescence assays to test samples for common viral respiratory pathogens such as RSV, influenza A and B viruses, parainfluenza type 1, 2, and 3 viruses, and human adenovirus. 16965707 View Related Publication
2 MRC-5 cell monolayers Used for virus isolation.
3 Primers targeting the predicted NP1 gene Used to test nucleic acid extracts for HBoV DNA by PCR.
4 pGEM-T Easy Vector (Promega) Used for cloning the 354-bp NP1 PCR fragment to obtain the HBoV-NP1 plasmid, which served as control in a subsequent real-time PCR assay.
5 LightCycler 2.0 (Roche Diagnostics) Used for performing the real-time PCR assay.
6 Primers BocaRT1 and BocaRT2 Used in the real-time PCR assay to quantitate HBoV DNA in positive samples.
7 FAM/TAMRA dually labeled probe Used in the real-time PCR assay for detecting PCR amplification.
8 FastStart DNA Hybridization Mix (Roche Diagnostics) Used for PCR amplification in the real-time PCR assay.
9 pGEM-T HBoV NP1 plasmid Used for generating standard curves in the PCR quantitation assay.
10 LightCycler control DNA kit (Roche Diagnostics) Used for measuring DNA levels in HBoV-positive samples.
11 Primers BocaSEQ1, BocaSEQ4, BocaSEQ2, and BocaSEQ3 Used for amplification and sequencing of a 1-kb DNA fragment encompassing the VP2 gene.