Panoramic Parvovirus Strain Discovery Data Chain

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ParvoDB ID PV001389 GenBank Accession MG680946
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 2016
Definition Human bocavirus 1 isolate V1445149 VP1 gene, complete cds. Submission Date 2017-12-14
Strain Name V1445149 Sampling Date 2014-12-23
Sampling Country Germany Location Germany
Submitted By Fakhiri,J., Linse,K.-P., Grimm,D. and Schnitzler,P. Submitting Institution Virology, University of Heidelberg, Im Neuenheimer Feld 267, Heidelberg 69120, Germany
Original Host Homo sapiens Sample Type serum or blood samples，airway samples
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Eculizumab Treatment for hemolytic uremic syndrome 31033910 View Related Publication
2 Various antibiotics Antibiotic treatment due to high C-reactive protein levels and to eliminate suspected bacterial infection. Specific antibiotics mentioned include cefotaxime, meropenem, ciprofloxacin, teicoplanin, linezolid, and erythromycin.
3 1x SensiMix SYBR No-ROX Kit (Bioline Reagents Ltd, London, United Kingdom) qPCR assays for detecting HboV1 DNA
4 HboV1-specific primers (forward primer 5′-CCTATATAACCTGCTGCACTTCCT-3′ and reverse primer 5′-AAGCCATAGTAGACTCACCACAAG-3′) Specific detection of HboV1 DNA in qPCR assays
5 In-house PCR primers (forward primer 5′-GTTACGTCTCGAA-GATTACAACACTTTATTGATGTTTG-3′ and reverse primer 5′-GTTACGTCTCAGCAGATGCCTCCAATTAAGAGACA-3′) Amplification of the complete VP1 gene of the HBoV1 genome
6 Real-time multiplex respiratory PCR (Fast Track Diagnostics respiratory pathogens 21, Esch-sur-Alzette, Luxembourg) Screening for multiple respiratory pathogens (influenza A virus including H1N1, influenza B virus, rhinovirus, respiratory syncytial virus, bocavirus, adenovirus, parainfluenza virus types 1-4, four coronaviruses, parechovirus, enterovirus, human metapneu