Panoramic Parvovirus Strain Discovery Data Chain
| ParvoDB ID | PV001133 | GenBank Accession | JN183933 |
| Subfamily | Parvovirinae | Genus | Tetraparvovirus |
| Species | Tetraparvovirus primate1 | Sequence Length | 1855 |
| Definition | Human parvovirus 4 isolate GhanaP17 nonstructural protein and structural protein genes, partial cds. | Submission Date | 2011-06-27 |
| Strain Name | GhanaP17 | Sampling Date | from 2004-01 to 2004-12 |
| Sampling Country | Ghana | Location | the rural Afigya Sekyere District, Ashanti Region, Ghana, Ghana |
| Submitted By | Eis-Hubinger,A.M., Reber,U., Drexler,J.F. and Drosten,C. | Submitting Institution | Institute of Virology, University of Bonn Medical Centre, Sigmund-Freud-Str. 25, Bonn 53105, Germany |
| Original Host | Homo sapiens | Sample Type | Plasma samples |
| Standardized Host Name | Homo sapiens | Host Tax Rank | species |
| Standardized Host Class | Mammalia | Standardized Host Order | Primates |
| Environmental Origin | - N/A - | Reagent Origin | - N/A - |
| Number | Reagent/Consumables | Purpose | PMID/Url | Reference |
|---|---|---|---|---|
| 1 | NucliSENS EasyMAG system (bioMérieux, Nürtingen, Germany) | Preparation of nucleic acid from 200-μL plasma samples. | 23017590 | View Related Publication |
| 2 | Primers described elsewhere | Used in two real-time PCRs to analyze samples. | ||
| 3 | PCR amplicons and additional genomic regions | Amplified and sequenced to identify viral DNA as PARV4 genotype 3. | ||
| 4 | Etest macromethod (bioMérieux) | Determination of MICs for nalidixic acid, ciprofloxacin, and chloramphenicol. | ||
| 5 | BacT/ALERT (bioMérieux, Marcy L’Etoile, France) | Blood culture system to identify pathogens. | ||
| 6 | Vitek II system (bioMérieux) | Antimicrobial drug susceptibility testing. | ||
| 7 | Sin (Berlin, Germany) | Serotyping of the pathogens. |